Source code for iris.nodes.normalization.linear_normalization

import numpy as np
from pydantic import PositiveInt

from iris.io.class_configs import Algorithm
from iris.io.dataclasses import EyeOrientation, GeometryPolygons, IRImage, NoiseMask, NormalizedIris
from iris.io.errors import NormalizationError
from iris.nodes.normalization.utils import correct_orientation, generate_iris_mask, normalize_all, to_uint8




class LinearNormalization(Algorithm):
    """Implementation of a normalization algorithm which uses linear transformation to map image pixels.

    Algorithm steps:
        1) Create linear grids of sampling radii based on parameters: res_in_r (height) and the number of extrapolated iris and pupil points from extrapolated_contours (width).
        2) Compute the mapping between the normalized image pixel location and the original image location.
        3) Obtain pixel values of normalized image using Nearest Neighbor interpolation.
    """



    class Parameters(Algorithm.Parameters):
        """Parameters class for LinearNormalization."""

        res_in_r: PositiveInt
        oversat_threshold: PositiveInt


    __parameters_type__ = Parameters

    def __init__(
        self,
        res_in_r: PositiveInt = 128,
        oversat_threshold: PositiveInt = 254,
    ) -> None:
        """Assign parameters.

        Args:
            res_in_r (PositiveInt): Normalized image r resolution. Defaults to 128.
            oversat_threshold (PositiveInt, optional): threshold for masking over-satuated pixels. Defaults to 254.
        """
        super().__init__(
            res_in_r=res_in_r,
            oversat_threshold=oversat_threshold,
        )



    def run(
        self,
        image: IRImage,
        noise_mask: NoiseMask,
        extrapolated_contours: GeometryPolygons,
        eye_orientation: EyeOrientation,
    ) -> NormalizedIris:
        """Normalize iris using linear transformation when sampling points from cartisian to polar coordinates.

        Args:
            image (IRImage): Input image to normalize.
            noise_mask (NoiseMask): Noise mask.
            extrapolated_contours (GeometryPolygons): Extrapolated contours.
            eye_orientation (EyeOrientation): Eye orientation angle.

        Returns:
            NormalizedIris: NormalizedIris object containing normalized image and iris mask.
        """
        if len(extrapolated_contours.pupil_array) != len(extrapolated_contours.iris_array):
            raise NormalizationError("The number of extrapolated iris and pupil points must be the same.")

        pupil_points, iris_points = correct_orientation(
            extrapolated_contours.pupil_array,
            extrapolated_contours.iris_array,
            eye_orientation.angle,
        )

        iris_mask = generate_iris_mask(extrapolated_contours, noise_mask.mask)
        iris_mask[image.img_data >= self.params.oversat_threshold] = False

        src_points = self._generate_correspondences(pupil_points, iris_points)

        normalized_image, normalized_mask = normalize_all(
            image=image.img_data, iris_mask=iris_mask, src_points=src_points
        )
        normalized_iris = NormalizedIris(
            normalized_image=to_uint8(normalized_image),
            normalized_mask=normalized_mask,
        )
        return normalized_iris


    def _generate_correspondences(self, pupil_points: np.ndarray, iris_points: np.ndarray) -> np.ndarray:
        """Generate correspondences between points in original image and normalized image.

        Args:
            pupil_points (np.ndarray): Pupil bounding points. NumPy array of shape (num_points = 512, xy_coords = 2).
            iris_points (np.ndarray): Iris bounding points. NumPy array of shape (num_points = 512, xy_coords = 2).

        Returns:
            Tuple[np.ndarray, np.ndarray]: Tuple with generated correspondences.
        """
        src_points = np.array(
            [pupil_points + x * (iris_points - pupil_points) for x in np.linspace(0.0, 1.0, self.params.res_in_r)]
        )

        return np.round(src_points).astype(int)